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ISMB
2007
13 years 10 months ago
A Chado case study: an ontology-based modular schema for representing genome-associated biological information
Motivation: A few years ago, FlyBase undertook to design a new database schema to store Drosophila data. It would fully integrate genomic sequence and annotation data with bibliog...
Chris Mungall, David B. Emmert
BMCBI
2010
154views more  BMCBI 2010»
13 years 7 months ago
LINNAEUS: A species name identification system for biomedical literature
Background: The task of recognizing and identifying species names in biomedical literature has recently been regarded as critical for a number of applications in text and data min...
Martin Gerner, Goran Nenadic, Casey M. Bergman
ESEM
2007
ACM
13 years 11 months ago
Value-Based Empirical Research Plan Evaluation
Empirical studies are crucial to gain evidence on the effects of software engineering methods and tools in defined contexts. However, empirical studies can be costly and thus need...
Stefan Biffl, Dietmar Winkler
COMPSAC
2002
IEEE
14 years 16 days ago
A Simple Mathematically Based Framework for Rule Extraction from an Arbitrary Programming Language
Programs use rules to dictate or constrain specific decisions or actions. These rules have typically been tested, revised, and updated continuously; therefore, they represent a su...
Frederick V. Ramsey, James J. Alpigini
SC
2009
ACM
14 years 2 months ago
Kepler + Hadoop: a general architecture facilitating data-intensive applications in scientific workflow systems
MapReduce provides a parallel and scalable programming model for data-intensive business and scientific applications. MapReduce and its de facto open source project, called Hadoop...
Jianwu Wang, Daniel Crawl, Ilkay Altintas