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BMCBI
2010
156views more  BMCBI 2010»
15 years 6 months ago
Global screening of potential Candida albicans biofilm-related transcription factors via network comparison
Background: Candida albicans is a commonly encountered fungal pathogen in humans. The formation of biofilm is a major virulence factor in C. albicans pathogenesis and is related t...
Yu-Chao Wang, Chung-Yu Lan, Wen-Ping Hsieh, Luis A...
ALMOB
2007
111views more  ALMOB 2007»
15 years 6 months ago
Transcriptional regulatory network discovery via multiple method integration: application to e. coli K12
Motivation: Transcriptional regulatory network (TRN) discovery from one method (e.g. microarray analysis, gene ontology, phylogenic similarity) does not seem feasible due to lack ...
Jingjun Sun, Kagan Tuncay, Alaa Abi Haidar, Lisa E...
WSDM
2009
ACM
187views Data Mining» more  WSDM 2009»
16 years 28 days ago
Speeding up algorithms on compressed web graphs
A variety of lossless compression schemes have been proposed to reduce the storage requirements of web graphs. One successful approach is virtual node compression [7], in which of...
Chinmay Karande, Kumar Chellapilla, Reid Andersen
IPPS
2002
IEEE
15 years 11 months ago
Parallel Out-of-Core Algorithm for Genome-Scale Enumeration of Metabolic Systemic Pathways
Systemic pathways-oriented approaches to analysis of metabolic networks are effective for small networks but are computationally infeasible for genome scale networks. Current comp...
Nagiza F. Samatova, Al Geist, George Ostrouchov, A...
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ICSM
2008
IEEE
16 years 17 days ago
Query-based filtering and graphical view generation for clone analysis
Code clones are similar program structures recurring in software systems. Clone detectors produce much information and a challenge is to identify useful clones depending on the go...
Yali Zhang, Hamid Abdul Basit, Stan Jarzabek, Dang...