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VLSISP
2010
119views more  VLSISP 2010»
13 years 3 months ago
Hardware Acceleration of HMMER on FPGAs
We propose a new parallelization scheme for the hmmsearch function of the HMMER software, in order to target FPGA technology. hmmsearch is a very compute intensive software for bio...
Steven Derrien, Patrice Quinton
CLUSTER
2003
IEEE
14 years 1 months ago
A Cluster-Based Solution for High Performance Hmmpfam Using EARTH Execution Model
Hmmpfam is a widely used computation-intensive bioinformatics software for sequence classification. The contribution of this paper is the first largely scalable and robust clust...
Weirong Zhu, Yanwei Niu, Jizhu Lu, Chuan Shen, Gua...
TPDS
2002
117views more  TPDS 2002»
13 years 8 months ago
Gemini: An Optical Interconnection Network for Parallel Processing
Abstract--The Gemini interconnect is a dual technology (optical and electrical) interconnection network designed for use in tightlycoupled multicomputer systems. It consists of a c...
Roger D. Chamberlain, Mark A. Franklin, Ch'ng Shi ...
ECLIPSE
2005
ACM
13 years 10 months ago
Leveraging Eclipse for integrated model-based engineering of web service compositions
In this paper we detail the design and implementation of an Eclipse plug-in for an integrated, model-based approach, to the engineering of web service compositions. The plug-in al...
Howard Foster, Sebastián Uchitel, Jeff Mage...
ISOLA
2010
Springer
13 years 7 months ago
Ten Years of Performance Evaluation for Concurrent Systems Using CADP
This article comprehensively surveys the work accomplished during the past decade on an approach to analyze concurrent systems qualitatively and quantitatively, by combining functi...
Nicolas Coste, Hubert Garavel, Holger Hermanns, Fr...