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» Design and Implementation of Multi-scale Databases
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1995
ACM
14 years 1 months ago
Performance of a Parallel Global Atmospheric Chemical Tracer Model
As part of a NASA HPCC Grand Challenge project, we are designing and implementing a parallel atmospheric chemical tracer model that will be suitable for use in global simulations....
James Demmel, Sharon Smith
BMCBI
2011
13 years 1 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
DILS
2005
Springer
14 years 3 months ago
PLATCOM: Current Status and Plan for the Next Stages
We have been developing a system for comparing multiple genomes, PLATCOM, where users can choose genomes of their choice freely and perform analysis of the selected genomes with a...
Kwangmin Choi, Jeong-Hyeon Choi, Amit Saple, Zhipi...
BMCBI
2010
101views more  BMCBI 2010»
13 years 10 months ago
Hidden Markov model speed heuristic and iterative HMM search procedure
Background: Profile hidden Markov models (profile-HMMs) are sensitive tools for remote protein homology detection, but the main scoring algorithms, Viterbi or Forward, require con...
L. Steven Johnson, Sean R. Eddy, Elon Portugaly
ICIP
2002
IEEE
14 years 12 months ago
No-reference perceptual quality assessment of JPEG compressed images
Human observers can easily assess the quality of a distorted image without examining the original image as a reference. By contrast, designing objective No-Reference (NR) quality ...
Hamid R. Sheikh, Zhou Wang, Alan C. Bovik