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BMCBI
2011
12 years 10 months ago
Faster Smith-Waterman database searches with inter-sequence SIMD parallelisation
Background: The Smith-Waterman algorithm for local sequence alignment is more sensitive than heuristic methods for database searching, but also more time-consuming. The fastest ap...
Torbjørn Rognes
ISORC
2009
IEEE
14 years 1 months ago
Embedded JIT Compilation with CACAO on YARI
Java is one of the most popular programming languages for the development of portable workstation and server applications available today. Because of its clean design and typesafe...
Florian Brandner, Tommy Thorn, Martin Schoeberl
FMICS
2007
Springer
14 years 26 days ago
An Approach to Formalization and Analysis of Message Passing Libraries
Message passing using libraries implementing the Message Passing Interface (MPI) standard is the dominant communication mechanism in high performance computing (HPC) applications. ...
Robert Palmer, Michael Delisi, Ganesh Gopalakrishn...
CAV
2009
Springer
206views Hardware» more  CAV 2009»
14 years 7 months ago
D-Finder: A Tool for Compositional Deadlock Detection and Verification
D-Finder tool implements a compositional method for the verification of component-based systems described in BIP language encompassing multi-party interaction. For deadlock detecti...
Saddek Bensalem, Marius Bozga, Thanh-Hung Nguyen, ...
SC
2009
ACM
14 years 1 months ago
Robust workflows for science and engineering
Scientific workflow tools allow users to specify complex computational experiments and provide a good framework for robust science and engineering. Workflows consist of pipelines ...
David Abramson, Blair Bethwaite, Colin Enticott, S...