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BMCBI
2004
139views more  BMCBI 2004»
13 years 7 months ago
Resolution of large and small differences in gene expression using models for the Bayesian analysis of gene expression levels an
Background: The detection of small yet statistically significant differences in gene expression in spotted DNA microarray studies is an ongoing challenge. Meeting this challenge r...
Jeffrey P. Townsend
BMCBI
2004
150views more  BMCBI 2004»
13 years 7 months ago
SS-Wrapper: a package of wrapper applications for similarity searches on Linux clusters
Background: Large-scale sequence comparison is a powerful tool for biological inference in modern molecular biology. Comparing new sequences to those in annotated databases is a u...
Chunlin Wang, Elliot J. Lefkowitz
CORR
2002
Springer
131views Education» more  CORR 2002»
13 years 7 months ago
Ownership Confinement Ensures Representation Independence for Object-Oriented Programs
for data abstraction and justifies reasoning by simulation. Representation independence has been shown for a variety of languages and constructs but not for shared references to mu...
Anindya Banerjee, David A. Naumann
NJC
2000
169views more  NJC 2000»
13 years 7 months ago
A Type System for Bounded Space and Functional In-Place Update
We show how linear typing can be used to obtain functional programs which modify heap-allocated data structures in place. We present this both as a "design pattern" for ...
Martin Hofmann
JACM
2002
163views more  JACM 2002»
13 years 7 months ago
Formal verification of standards for distance vector routing protocols
We show how to use an interactive theorem prover, HOL, together with a model checker, SPIN, to prove key properties of distance vector routing protocols. We do three case studies: ...
Karthikeyan Bhargavan, Davor Obradovic, Carl A. Gu...