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» Detection of subtle variations as consensus motifs
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TCS
2008
13 years 11 months ago
Detection of subtle variations as consensus motifs
We address the problem of detecting consensus motifs, that occur with subtle variations, across multiple sequences. These are usually functional domains in DNA sequences such as t...
Matteo Comin, Laxmi Parida
RECOMB
2002
Springer
14 years 11 months ago
Finding motifs in the twilight zone
We introduce the notion of a multiprofile and use it for finding subtle motifs in DNA sequences. Multiprofiles generalize the notion of a profile and allow one to detect subtle co...
Uri Keich, Pavel A. Pevzner
BMCBI
2007
179views more  BMCBI 2007»
13 years 11 months ago
rMotifGen: random motif generator for DNA and protein sequences
Background: Detection of short, subtle conserved motif regions within a set of related DNA or amino acid sequences can lead to discoveries about important regulatory domains such ...
Eric C. Rouchka, C. Timothy Hardin
ICML
1999
IEEE
15 years 5 hour ago
Detecting Motifs from Sequences
The problemofmultipleglobalcomparisonin familiesof biologicalsequences has been wellstudied. Fewer algorithms have been developed for identifying local consensus patterns or motif...
Yuh-Jyh Hu, Suzanne B. Sandmeyer, Dennis F. Kibler