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ASPLOS
2009
ACM
14 years 8 months ago
Architectural support for SWAR text processing with parallel bit streams: the inductive doubling principle
Parallel bit stream algorithms exploit the SWAR (SIMD within a register) capabilities of commodity processors in high-performance text processing applications such as UTF8 to UTF-...
Robert D. Cameron, Dan Lin
BMCBI
2011
13 years 3 months ago
DecGPU: distributed error correction on massively parallel graphics processing units using CUDA and MPI
Background: Next-generation sequencing technologies have led to the high-throughput production of sequence data (reads) at low cost. However, these reads are significantly shorter...
Yongchao Liu, Bertil Schmidt, Douglas L. Maskell
PPPJ
2009
ACM
14 years 2 months ago
Automatic parallelization for graphics processing units
Accelerated graphics cards, or Graphics Processing Units (GPUs), have become ubiquitous in recent years. On the right kinds of problems, GPUs greatly surpass CPUs in terms of raw ...
Alan Leung, Ondrej Lhoták, Ghulam Lashari
SCANGIS
2003
13 years 9 months ago
Parallel Distributed Application Framework for Earth Science Data Processing
The management and the processing of Earth science data has been gaining importance over the last decade due to higher data volumes generated by a larger number of instruments and ...
Petr Votava, Rama Nemani, Keith Golden, Daniel E. ...
ICCMS
2009
118views more  ICCMS 2009»
13 years 5 months ago
Optimized Parallel Implementation of Gillespie's First Reaction Method on Graphics Processing Units
The simulation of chemical reacting systems is one of the most challenging topics in Systems Biology, due to their complexity and inherent randomness. The Gillespie's Stochas...
Cristian Dittamo, Davide Cangelosi