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» Differential Algebra and System Modeling in Cellular Biology
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ENTCS
2010
133views more  ENTCS 2010»
13 years 7 months ago
Towards Measurable Types for Dynamical Process Modeling Languages
Process modeling languages such as "Dynamical Grammars" are highly expressive in the processes they model using stochastic and deterministic dynamical systems, and can b...
Eric Mjolsness
GCB
2009
Springer
154views Biometrics» more  GCB 2009»
13 years 11 months ago
Comparative Identification of Differential Interactions from Trajectories of Dynamic Biological Networks
Abstract: It is often challenging to reconstruct accurately a complete dynamic biological network due to the scarcity of data collected in cost-effective experiments. This paper ad...
Zhengyu Ouyang, Mingzhou Song
QEST
2005
IEEE
14 years 1 months ago
Fluid Flow Approximation of PEPA models
In this paper we present a novel performance analysis technique for large-scale systems modelled in the stochastic process algebra PEPA. In contrast to the well-known approach of ...
Jane Hillston
CONCUR
2007
Springer
14 years 1 months ago
Rule-Based Modelling of Cellular Signalling
Abstract. Modelling is becoming a necessity in studying biological signalling pathways, because the combinatorial complexity of such systems rapidly overwhelms intuitive and qualit...
Vincent Danos, Jérôme Feret, Walter F...
GCB
2010
Springer
204views Biometrics» more  GCB 2010»
13 years 5 months ago
Learning Pathway-based Decision Rules to Classify Microarray Cancer Samples
: Despite recent advances in DNA chip technology current microarray gene expression studies are still affected by high noise levels, small sample sizes and large numbers of uninfor...
Enrico Glaab, Jonathan M. Garibaldi, Natalio Krasn...