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BMCBI
2010
137views more  BMCBI 2010»
13 years 8 months ago
Improving pairwise sequence alignment accuracy using near-optimal protein sequence alignments
Background: While the pairwise alignments produced by sequence similarity searches are a powerful tool for identifying homologous proteins - proteins that share a common ancestor ...
Michael L. Sierk, Michael E. Smoot, Ellen J. Bass,...
BMCBI
2010
121views more  BMCBI 2010»
13 years 6 months ago
A grammar-based distance metric enables fast and accurate clustering of large sets of 16S sequences
Background: We propose a sequence clustering algorithm and compare the partition quality and execution time of the proposed algorithm with those of a popular existing algorithm. T...
David J. Russell, Samuel F. Way, Andrew K. Benson,...
IMCSIT
2010
13 years 6 months ago
TREF - TRanslation Enhancement Framework for Japanese-English
Abstract--We present a method for improving existing statistical machine translation methods using an knowledge-base compiled from a bilingual corpus as well as sequence alignment ...
Bartholomäus Wloka, Werner Winiwarter
TOG
2008
143views more  TOG 2008»
13 years 8 months ago
Discovering structural regularity in 3D geometry
We introduce a computational framework for discovering regular or repeated geometric structures in 3D shapes. We describe and classify possible regular structures and present an e...
Mark Pauly, Niloy J. Mitra, Johannes Wallner, Helm...
SISAP
2010
IEEE
135views Data Mining» more  SISAP 2010»
13 years 7 months ago
Improving the similarity search of tandem mass spectra using metric access methods
In biological applications, the tandem mass spectrometry is a widely used method for determining protein and peptide sequences from an ”in vitro” sample. The sequences are not...
Jiri Novák, Tomás Skopal, David Hoks...