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CIBCB
2006
IEEE
14 years 1 months ago
A Systematic Computational Approach for Transcription Factor Target Gene Prediction
— Computational prediction of transcription factor’s binding sites and regulatory target genes has great value to the biological studies of cellular process. Existing practices...
Ji He, Xinbin Dai, Xuechun Zhao
JCB
2007
145views more  JCB 2007»
13 years 7 months ago
Confounding Factors in HGT Detection: Statistical Error, Coalescent Effects, and Multiple Solutions
Prokaryotic organisms share genetic material across species boundaries by means of a process known as horizontal gene transfer (HGT). This process has great significance for unde...
Cuong Than, Derek A. Ruths, Hideki Innan, Luay Nak...
SIPS
2007
IEEE
14 years 1 months ago
An Area-Efficient FPGA-Based Architecture for Fully-Parallel Stochastic LDPC Decoding
Stochastic decoding is a new alternative method for low complexity decoding of error-correcting codes. This paper presents the first hardware architecture for stochastic decoding...
Saeed Sharifi Tehrani, Shie Mannor, Warren J. Gros...
DATE
2007
IEEE
92views Hardware» more  DATE 2007»
14 years 1 months ago
Random sampling of moment graph: a stochastic Krylov-reduction algorithm
In this paper we introduce a new algorithm for model order reduction in the presence of parameter or process variation. Our analysis is performed using a graph interpretation of t...
Zhenhai Zhu, Joel R. Phillips
BMCBI
2006
170views more  BMCBI 2006»
13 years 7 months ago
Biclustering of gene expression data by non-smooth non-negative matrix factorization
Background: The extended use of microarray technologies has enabled the generation and accumulation of gene expression datasets that contain expression levels of thousands of gene...
Pedro Carmona-Saez, Roberto D. Pascual-Marqui, Fra...