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» Discriminative Locality Alignment
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NIPS
2003
13 years 11 months ago
Non-linear CCA and PCA by Alignment of Local Models
We propose a non-linear Canonical Correlation Analysis (CCA) method which works by coordinating or aligning mixtures of linear models. In the same way that CCA extends the idea of...
Jakob J. Verbeek, Sam T. Roweis, Nikos A. Vlassis
BMCBI
2004
158views more  BMCBI 2004»
13 years 9 months ago
Improvement of alignment accuracy utilizing sequentially conserved motifs
Background: Multiple sequence alignment algorithms are very important tools in molecular biology today. Accurate alignment of proteins is central to several areas such as homology...
Saikat Chakrabarti, Nitin Bhardwaj, Prem A. Anand,...
ACL
2009
13 years 7 months ago
Coordinate Structure Analysis with Global Structural Constraints and Alignment-Based Local Features
We propose a hybrid approach to coordinate structure analysis that combines a simple grammar to ensure consistent global structure of coordinations in a sentence, and features bas...
Kazuo Hara, Masashi Shimbo, Hideharu Okuma, Yuji M...

Publication
234views
14 years 1 months ago
Evolution of Analog Networks using Local String Alignment on Highly Reorganizable Genomes
We introduce and apply a genetic representation for analog electronic circuits based on the association of character strings extracted from the genome with the terminals and param...
Claudio Mattiussi, Dario Floreano
HPDC
2010
IEEE
13 years 10 months ago
MPIPairwiseStatSig: parallel pairwise statistical significance estimation of local sequence alignment
Sequence comparison is considered as a cornerstone application in bioinformatics, which forms the basis of many other applications. In particular, pairwise sequence alignment is a...
Ankit Agrawal, Sanchit Misra, Daniel Honbo, Alok N...