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» Distance Patterns in Structural Similarity
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ALMOB
2006
138views more  ALMOB 2006»
13 years 9 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
SDM
2011
SIAM
218views Data Mining» more  SDM 2011»
13 years 13 days ago
Segmented nestedness in binary data
A binary matrix is fully nested if its columns form a chain of subsets; that is, any two columns are ordered by the subset relation, where we view each column as a subset of the r...
Esa Junttila, Petteri Kaski
BMCBI
2008
114views more  BMCBI 2008»
13 years 9 months ago
Dinucleotide controlled null models for comparative RNA gene prediction
Background: Comparative prediction of RNA structures can be used to identify functional noncoding RNAs in genomic screens. It was shown recently by Babak et al. [BMC Bioinformatic...
Tanja Gesell, Stefan Washietl
GIS
2006
ACM
14 years 10 months ago
Efficient position-independent iconic search using an R-theta index
An iconic image database is a collection of symbolic images where each image is a collection of labeled point features called icons. A method is presented to support fast position...
Charles Ben Cranston, Hanan Samet
KDD
2009
ACM
239views Data Mining» more  KDD 2009»
14 years 10 months ago
Tell me something I don't know: randomization strategies for iterative data mining
There is a wide variety of data mining methods available, and it is generally useful in exploratory data analysis to use many different methods for the same dataset. This, however...
Heikki Mannila, Kai Puolamäki, Markus Ojala, ...