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BMCBI
2010
198views more  BMCBI 2010»
13 years 9 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
CONCURRENCY
1998
181views more  CONCURRENCY 1998»
13 years 8 months ago
Communication Performance of Java-Based Parallel Virtual Machines
Message passing libraries such as Parallel Virtual Machine PVM and Message Passing Interface MPI provide a common Application Programming Interface API to implement parallel...
Narendar Yalamanchilli, William W. Cohen
CCGRID
2007
IEEE
14 years 3 months ago
Dynamic Malleability in Iterative MPI Applications
Malleability enables a parallel application’s execution system to split or merge processes modifying granularity. While process migration is widely used to adapt applications to...
Kaoutar El Maghraoui, Travis J. Desell, Boleslaw K...
ICS
2005
Tsinghua U.
14 years 2 months ago
Multigrain parallel Delaunay Mesh generation: challenges and opportunities for multithreaded architectures
Given the importance of parallel mesh generation in large-scale scientific applications and the proliferation of multilevel SMTbased architectures, it is imperative to obtain ins...
Christos D. Antonopoulos, Xiaoning Ding, Andrey N....
CLUSTER
2006
IEEE
13 years 9 months ago
Optimizing MPI collective communication by orthogonal structures
Many parallel applications from scientific computing use MPI collective communication operations to collect or distribute data. Since the execution times of these communication op...
Matthias Kühnemann, Thomas Rauber, Gudula R&u...