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BMCBI
2010
126views more  BMCBI 2010»
13 years 7 months ago
Systematic integration of experimental data and models in systems biology
Background: The behaviour of biological systems can be deduced from their mathematical models. However, multiple sources of data in diverse forms are required in the construction ...
Peter Li, Joseph O. Dada, Daniel Jameson, Irena Sp...
BMCBI
2010
108views more  BMCBI 2010»
13 years 7 months ago
BIGSdb: Scalable analysis of bacterial genome variation at the population level
Background: The opportunities for bacterial population genomics that are being realised by the application of parallel nucleotide sequencing require novel bioinformatics platforms...
Keith A. Jolley, Martin C. J. Maiden
DEBU
2010
138views more  DEBU 2010»
13 years 7 months ago
A Rule-Based Citation System for Structured and Evolving Datasets
We consider the requirements that a citation system must fulfill in order to cite structured and evolving data sets. Such a system must take into account variable granularity, con...
Peter Buneman, Gianmaria Silvello
BMCBI
2010
195views more  BMCBI 2010»
13 years 4 months ago
MBAT: A scalable informatics system for unifying digital atlasing workflows
Background: Digital atlases provide a common semantic and spatial coordinate system that can be leveraged to compare, contrast, and correlate data from disparate sources. As the q...
Daren Lee, Seth Ruffins, Queenie Ng, Nikhil Sane, ...
BMCBI
2011
13 years 4 months ago
Flexible taxonomic assignment of ambiguous sequencing reads
Background: To characterize the diversity of bacterial populations in metagenomic studies, sequencing reads need to be accurately assigned to taxonomic units in a given reference ...
José Carlos Clemente, Jesper Jansson, Gabri...
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