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» Drawing Phylogenetic Trees
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DAM
2000
86views more  DAM 2000»
13 years 7 months ago
A supertree method for rooted trees
Abstract. The amalgamation of leaf-labelled (phylogenetic) trees on overlapping leaf sets into one (super)tree is a central problem in several areas of classification, particularly...
Charles Semple, Mike A. Steel
CPM
2004
Springer
84views Combinatorics» more  CPM 2004»
14 years 24 days ago
Small Phylogeny Problem: Character Evolution Trees
Abstract. Phylogenetics is a science of determining connections between groups of organisms in terms of ancestor/descendent relationships, usually expressed by phylogenetic trees, ...
Arvind Gupta, Ján Manuch, Ladislav Stacho, ...
WABI
2005
Springer
120views Bioinformatics» more  WABI 2005»
14 years 26 days ago
A Compressed Format for Collections of Phylogenetic Trees and Improved Consensus Performance
Phylogenetic tree searching algorithms often produce thousands of trees which biologists save in Newick format in order to perform further analysis. Unfortunately, Newick is neithe...
Robert S. Boyer, Warren A. Hunt Jr., Serita M. Nel...
BMCBI
2008
107views more  BMCBI 2008»
13 years 7 months ago
Extended Newick: it is time for a standard representation of phylogenetic networks
Background: Phylogenetic trees resulting from molecular phylogenetic analysis are available in Newick format from specialized databases but when it comes to phylogenetic networks,...
Gabriel Cardona, Francesc Rosselló, Gabriel...
WG
2004
Springer
14 years 22 days ago
Computing Bounded-Degree Phylogenetic Roots of Disconnected Graphs
The Phylogenetic kth Root Problem (PRk) is the problem of finding a (phylogenetic) tree T from a given graph G = (V, E) such that (1) T has no degree-2 internal nodes, (2) the ex...
Zhi-Zhong Chen, Tatsuie Tsukiji