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IPPS
2008
IEEE
14 years 4 months ago
Overcoming scaling challenges in biomolecular simulations across multiple platforms
NAMD† is a portable parallel application for biomolecular simulations. NAMD pioneered the use of hybrid spatial and force decomposition, a technique now used by most scalable pr...
Abhinav Bhatele, Sameer Kumar, Chao Mei, James C. ...
ANSS
2007
IEEE
14 years 4 months ago
JANE - The Java Ad Hoc Network Development Environment
This work describes a Java based development platform which is intended to support ad hoc network researchers in application and protocol design. Software development within this ...
Daniel Görgen, Hannes Frey, Christian Hiedels
CP
2007
Springer
14 years 4 months ago
Tradeoffs in the Complexity of Backdoor Detection
Abstract There has been considerable interest in the identification of structural properties of combinatorial problems that lead to efficient algorithms for solving them. Some of...
Bistra N. Dilkina, Carla P. Gomes, Ashish Sabharwa...
SAMOS
2007
Springer
14 years 4 months ago
Online Prediction of Applications Cache Utility
— General purpose architectures are designed to offer average high performance regardless of the particular application that is being run. Performance and power inefficiencies a...
Miquel Moretó, Francisco J. Cazorla, Alex R...
BIBE
2005
IEEE
126views Bioinformatics» more  BIBE 2005»
14 years 3 months ago
Highly Scalable and Accurate Seeds for Subsequence Alignment
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
Abhijit Pol, Tamer Kahveci
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