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» Dynamic Programming and Fast Matrix Multiplication
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NSDI
2008
13 years 9 months ago
Swift: A Fast Dynamic Packet Filter
This paper presents Swift, a packet filter for high performance packet capture on commercial off-the-shelf hardware. The key features of Swift include (1) extremely low filter upd...
Zhenyu Wu, Mengjun Xie, Haining Wang
ICALP
2004
Springer
14 years 23 days ago
A Faster Algorithm for Minimum Cycle Basis of Graphs
Abstract. In this paper we consider the problem of computing a minimum cycle basis in a graph G with m edges and n vertices. The edges of G have non-negative weights on them. The p...
Telikepalli Kavitha, Kurt Mehlhorn, Dimitrios Mich...
BMCBI
2010
198views more  BMCBI 2010»
13 years 7 months ago
ClustalXeed: a GUI-based grid computation version for high performance and terabyte size multiple sequence alignment
Background: There is an increasing demand to assemble and align large-scale biological sequence data sets. The commonly used multiple sequence alignment programs are still limited...
Taeho Kim, Hyun Joo
POPL
2010
ACM
14 years 4 months ago
From Program Verification to Program Synthesis
This paper describes a novel technique for the synthesis of imperative programs. Automated program synthesis has the potential to make programming and the design of systems easier...
Saurabh Srivastava, Sumit Gulwani, Jeffrey S. Fost...
BMCBI
2008
163views more  BMCBI 2008»
13 years 7 months ago
ProfileGrids as a new visual representation of large multiple sequence alignments: a case study of the RecA protein family
Background: Multiple sequence alignments are a fundamental tool for the comparative analysis of proteins and nucleic acids. However, large data sets are no longer manageable for v...
Alberto I. Roca, Albert E. Almada, Aaron C. Abajia...