353 search results - page 32 / 71 » Dynamic programming alignment accuracy |
ALMOB
2008
13 years 7 months ago
2008
Background: Identification of homologous regions or conserved syntenies across genomes is one crucial step in comparative genomics. This task is usually performed by genome alignm...
IWMM
1998
Springer
13 years 12 months ago
1998
Springer
We show that for 8 real and varied C and C++ programs, several conventional dynamic storage allocators provide nearzero fragmentation, once we account for overheads due to impleme...
DASFAA
2005
IEEE
14 years 1 months ago
2005
IEEE
A novel approach for similarity search on the protein structure databases is proposed. PADS (Protein Alignment by Directional shape Signatures) incorporates the three dimensional ...
JPDC
2007
13 years 7 months ago
2007
In this paper, we address the problem of multiple sequence alignment (MSA) for handling very large number of proteins sequences on mesh-based multiprocessor architectures. As the ...
PLDI
2012
ACM
11 years 10 months ago
2012
ACM
Approximate program transformations such as skipping tasks [29, 30], loop perforation [21, 22, 35], reduction sampling [38], multiple selectable implementations [3, 4, 16, 38], dy...