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BMCBI
2010
149views more  BMCBI 2010»
13 years 8 months ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...
INFOCOM
2008
IEEE
14 years 2 months ago
Proxy Caching in Split TCP: Dynamics, Stability and Tail Asymptotics
Abstract—The split of a multihop, point to point TCP connection consists in replacing a plain, end-to-end TCP connection by a cascade of TCP connections. In such a cascade, conne...
François Baccelli, Giovanna Carofiglio, Ser...
PLDI
2012
ACM
11 years 10 months ago
Scalable and precise dynamic datarace detection for structured parallelism
Existing dynamic race detectors suffer from at least one of the following three limitations: (i) space overhead per memory location grows linearly with the number of parallel thre...
Raghavan Raman, Jisheng Zhao, Vivek Sarkar, Martin...
CORR
2011
Springer
221views Education» more  CORR 2011»
13 years 2 months ago
Course on System Design (structural approach)
—The article describes a course on system design (structural approach) which involves the following: issues of systems engineering; structural models; basic technological problem...
Mark Sh. Levin
BMCBI
2005
147views more  BMCBI 2005»
13 years 7 months ago
GATA: a graphic alignment tool for comparative sequence analysis
Background: Several problems exist with current methods used to align DNA sequences for comparative sequence analysis. Most dynamic programming algorithms assume that conserved se...
David A. Nix, Michael B. Eisen