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» E-CAST: A Data Mining Algorithm for Gene Expression Data
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BMCBI
2008
132views more  BMCBI 2008»
13 years 7 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
KDD
2009
ACM
188views Data Mining» more  KDD 2009»
14 years 2 months ago
BGP-lens: patterns and anomalies in internet routing updates
The Border Gateway Protocol (BGP) is one of the fundamental computer communication protocols. Monitoring and mining BGP update messages can directly reveal the health and stabilit...
B. Aditya Prakash, Nicholas Valler, David Andersen...
BMCBI
2008
169views more  BMCBI 2008»
13 years 7 months ago
CompMoby: Comparative MobyDick for detection of cis-regulatory motifs
Background: The regulation of gene expression is complex and occurs at many levels, including transcriptional and post-transcriptional, in metazoans. Transcriptional regulation is...
Christina Chaivorapol, Collin Melton, Grace Wei, R...
JMLR
2006
96views more  JMLR 2006»
13 years 7 months ago
Rearrangement Clustering: Pitfalls, Remedies, and Applications
Given a matrix of values in which the rows correspond to objects and the columns correspond to features of the objects, rearrangement clustering is the problem of rearranging the ...
Sharlee Climer, Weixiong Zhang
BMCBI
2006
184views more  BMCBI 2006»
13 years 7 months ago
PubFocus: semantic MEDLINE/PubMed citations analytics through integration of controlled biomedical dictionaries and ranking algo
Background: Understanding research activity within any given biomedical field is important. Search outputs generated by MEDLINE/PubMed are not well classified and require lengthy ...
Maksim V. Plikus, Zina Zhang, Cheng-Ming Chuong