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WABI
2007
Springer
109views Bioinformatics» more  WABI 2007»
14 years 2 months ago
A Novel Method for Signal Transduction Network Inference from Indirect Experimental Evidence
In this paper we introduce a new method of combined synthesis and inference of biological signal transduction networks. A main idea of our method lies in representing observed cau...
Réka Albert, Bhaskar DasGupta, Riccardo Don...
ICCAD
2007
IEEE
148views Hardware» more  ICCAD 2007»
14 years 5 months ago
Fast exact Toffoli network synthesis of reversible logic
— The research in the field of reversible logic is motivated by its application in low-power design, optical computing and quantum computing. Hence synthesis of reversible logic...
Robert Wille, Daniel Große
ESA
2005
Springer
123views Algorithms» more  ESA 2005»
14 years 1 months ago
Oblivious vs. Distribution-Based Sorting: An Experimental Evaluation
We compare two algorithms for sorting out-of-core data on a distributed-memory cluster. One algorithm, Csort, is a 3-pass oblivious algorithm. The other, Dsort, makes three passes...
Geeta Chaudhry, Thomas H. Cormen
WEA
2010
Springer
330views Algorithms» more  WEA 2010»
14 years 2 months ago
Exact Bipartite Crossing Minimization under Tree Constraints
A tanglegram consists of a pair of (not necessarily binary) trees T1, T2 with leaf sets L1, L2. Additional edges, called tangles, may connect nodes in L1 with those in L2. The task...
Frank Baumann, Christoph Buchheim, Frauke Liers
ALENEX
2009
106views Algorithms» more  ALENEX 2009»
13 years 9 months ago
Drawing Binary Tanglegrams: An Experimental Evaluation
A tanglegram is a pair of trees whose leaf sets are in oneto-one correspondence; matching leaves are connected by inter-tree edges. In applications such as phylogenetics or hierar...
Martin Nöllenburg, Markus Völker, Alexan...