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» Early Assessment of Classification Performance
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BMCBI
2005
94views more  BMCBI 2005»
13 years 10 months ago
Reproducible Clusters from Microarray Research: Whither?
Motivation: In cluster analysis, the validity of specific solutions, algorithms, and procedures present significant challenges because there is no null hypothesis to test and no &...
Nikhil R. Garge, Grier P. Page, Alan P. Sprague, B...
BMCBI
2010
123views more  BMCBI 2010»
13 years 11 months ago
A new protein binding pocket similarity measure based on comparison of clouds of atoms in 3D: application to ligand prediction
Background: Predicting which molecules can bind to a given binding site of a protein with known 3D structure is important to decipher the protein function, and useful in drug desi...
Brice Hoffmann, Mikhail Zaslavskiy, Jean-Philippe ...
BMCBI
2008
100views more  BMCBI 2008»
13 years 11 months ago
PatternLab for proteomics: a tool for differential shotgun proteomics
Background: A goal of proteomics is to distinguish between states of a biological system by identifying protein expression differences. Liu et al. demonstrated a method to perform...
Paulo C. Carvalho, Juliana S. G. Fischer, Emily I....
BMCBI
2006
114views more  BMCBI 2006»
13 years 11 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
IJMI
2007
86views more  IJMI 2007»
13 years 10 months ago
Using argumentation to extract key sentences from biomedical abstracts
s from Biomedical Abstracts Patrick Rucha , Celia Boyer c , Christine Chichesterb , Imad Tbahritiab Antoine Geissbühlera , Paul Fabrya , Julien Gobeilla , Violaine Pilletab , Diet...
Patrick Ruch, Célia Boyer, Christine Chiche...