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» Edit distance between two RNA structures
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CORR
2010
Springer
200views Education» more  CORR 2010»
13 years 7 months ago
Unified Compression-Based Acceleration of Edit-Distance Computation
The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic programming s...
Danny Hermelin, Gad M. Landau, Shir Landau, Oren W...
PR
2011
13 years 2 months ago
A sum-over-paths extension of edit distances accounting for all sequence alignments
This paper introduces a simple Sum-over-Paths (SoP) formulation of string edit distances accounting for all possible alignments between two sequences, and extends related previous...
Silvia García-Díez, François ...
PVLDB
2008
201views more  PVLDB 2008»
13 years 7 months ago
Ed-Join: an efficient algorithm for similarity joins with edit distance constraints
There has been considerable interest in similarity join in the research community recently. Similarity join is a fundamental operation in many application areas, such as data inte...
Chuan Xiao, Wei Wang 0011, Xuemin Lin
BMCBI
2006
95views more  BMCBI 2006»
13 years 7 months ago
A quantitative analysis of secondary RNA structure using domination based parameters on trees
Background: It has become increasingly apparent that a comprehensive database of RNA motifs is essential in order to achieve new goals in genomic and proteomic research. Secondary...
Teresa W. Haynes, Debra J. Knisley, Edith Seier, Y...
STACS
2009
Springer
14 years 2 months ago
A Unified Algorithm for Accelerating Edit-Distance Computation via Text-Compression
The edit distance problem is a classical fundamental problem in computer science in general, and in combinatorial pattern matching in particular. The standard dynamic-programming s...
Danny Hermelin, Gad M. Landau, Shir Landau, Oren W...