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» Edit distance between two RNA structures
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IPL
2002
74views more  IPL 2002»
13 years 7 months ago
Restricted rotation distance between binary trees
Restricted rotation distance between pairs of rooted binary trees measures differences in tree shape and is related to rotation distance. In restricted rotation distance, the rota...
Sean Cleary
FPGA
2008
ACM
174views FPGA» more  FPGA 2008»
13 years 9 months ago
Pattern-based behavior synthesis for FPGA resource reduction
Pattern-based synthesis has drawn wide interest from researchers who tried to utilize the regularity in applications for design optimizations. In this paper we present a general p...
Jason Cong, Wei Jiang
SODA
2010
ACM
181views Algorithms» more  SODA 2010»
13 years 6 months ago
Near-Optimal Sublinear Time Algorithms for Ulam Distance
We give near-tight bounds for estimating the edit distance between two non-repetitive strings (Ulam distance) with constant approximation, in sub-linear time. For two strings of l...
Alexandr Andoni, Huy L. Nguyen
CIKM
2006
Springer
13 years 11 months ago
Describing differences between databases
We study the novel problem of efficiently computing the update distance for a pair of relational databases. In analogy to the edit distance of strings, we define the update distan...
Heiko Müller, Johann Christoph Freytag, Ulf L...
CSB
2005
IEEE
119views Bioinformatics» more  CSB 2005»
14 years 1 months ago
Temperature and Mutation Switches in the Secondary Structure of Small RNAs
Conformational switching in the secondary structure of RNAs has recently attracted considerable attention, fostered by the discovery of ‘riboswitches’ in living organisms. The...
Assaf Avihoo, Danny Barash