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SODA
1998
ACM
157views Algorithms» more  SODA 1998»
13 years 9 months ago
Approximate String Matching: A Simpler Faster Algorithm
We give two algorithms for finding all approximate matches of a pattern in a text, where the edit distance between the pattern and the matching text substring is at most k. The fir...
Richard Cole, Ramesh Hariharan
BMCBI
2010
153views more  BMCBI 2010»
13 years 8 months ago
VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences
Background: Understanding the community structure of microbes is typically accomplished by sequencing 16S ribosomal RNA (16S rRNA) genes. These community data can be represented b...
Hiroshi Mori, Fumito Maruyama, Ken Kurokawa
RECOMB
2005
Springer
14 years 8 months ago
RNA-RNA Interaction Prediction and Antisense RNA Target Search
Abstract. Recent studies demonstrating the existence of special non-coding "antisense" RNAs used in post-transcriptional gene regulation have received considerable attent...
Can Alkan, Emre Karakoç, Joseph H. Nadeau, ...
GCB
2009
Springer
180views Biometrics» more  GCB 2009»
14 years 2 months ago
2D Projections of RNA Folding Landscapes
Abstract: The analysis of RNA folding landscapes yields insights into the kinetic folding behavior not available from classical structure prediction methods. This is especially imp...
Ronny Lorenz, Christoph Flamm, Ivo L. Hofacker
MFCS
2007
Springer
14 years 1 months ago
Finding Paths Between Graph Colourings: PSPACE-Completeness and Superpolynomial Distances
Suppose we are given a graph G together with two proper vertex k-colourings of G, α and β. How easily can we decide whether it is possible to transform α into β by recolouring...
Paul S. Bonsma, Luis Cereceda