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» Effective linear programming based placement methods
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BMCBI
2010
156views more  BMCBI 2010»
13 years 8 months ago
Protein complex prediction via verifying and reconstructing the topology of domain-domain interactions
Background: High-throughput methods for detecting protein-protein interactions enable us to obtain large interaction networks, and also allow us to computationally identify the as...
Yosuke Ozawa, Rintaro Saito, Shigeo Fujimori, Hisa...
ALMOB
2006
138views more  ALMOB 2006»
13 years 8 months ago
A combinatorial optimization approach for diverse motif finding applications
Background: Discovering approximately repeated patterns, or motifs, in biological sequences is an important and widely-studied problem in computational molecular biology. Most fre...
Elena Zaslavsky, Mona Singh
ALT
2003
Springer
14 years 4 days ago
Efficiently Learning the Metric with Side-Information
Abstract. A crucial problem in machine learning is to choose an appropriate representation of data, in a way that emphasizes the relations we are interested in. In many cases this ...
Tijl De Bie, Michinari Momma, Nello Cristianini
HYBRID
2010
Springer
13 years 10 months ago
Receding horizon control for temporal logic specifications
In this paper, we describe a receding horizon scheme that satisfies a class of linear temporal logic specifications sufficient to describe a wide range of properties including saf...
Tichakorn Wongpiromsarn, Ufuk Topcu, Richard M. Mu...
ISCI
2008
165views more  ISCI 2008»
13 years 8 months ago
Support vector regression from simulation data and few experimental samples
This paper considers nonlinear modeling based on a limited amount of experimental data and a simulator built from prior knowledge. The problem of how to best incorporate the data ...
Gérard Bloch, Fabien Lauer, Guillaume Colin...