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BCB
2010
140views Bioinformatics» more  BCB 2010»
13 years 3 months ago
Guiding belief propagation using domain knowledge for protein-structure determination
A major bottleneck in high-throughput protein crystallography is producing protein-structure models from an electrondensity map. In previous work, we developed Acmi, a probabilist...
Ameet Soni, Craig A. Bingman, Jude W. Shavlik
BCB
2010
150views Bioinformatics» more  BCB 2010»
13 years 3 months ago
Enzymatic target identification with dynamic states
As a metabolic network reaches from a state to a steady state, a subset of its fluxes gradually change. The sequence of intermediate states, called the dynamic state, shows the pa...
Bin Song, Sanjay Ranka, Tamer Kahveci
BMCBI
2011
13 years 3 months ago
Multiclass classification of microarray data samples with a reduced number of genes
Background: Multiclass classification of microarray data samples with a reduced number of genes is a rich and challenging problem in Bioinformatics research. The problem gets hard...
Elizabeth Tapia, Leonardo Ornella, Pilar Bulacio, ...
JMLR
2011
192views more  JMLR 2011»
13 years 3 months ago
Minimum Description Length Penalization for Group and Multi-Task Sparse Learning
We propose a framework MIC (Multiple Inclusion Criterion) for learning sparse models based on the information theoretic Minimum Description Length (MDL) principle. MIC provides an...
Paramveer S. Dhillon, Dean P. Foster, Lyle H. Unga...
TC
2011
13 years 3 months ago
Maximizing Spare Utilization by Virtually Reorganizing Faulty Cache Lines
—Aggressive technology scaling to 45nm and below introduces serious reliability challenges to the design of microprocessors. Since a large fraction of chip area is devoted to on-...
Amin Ansari, Shantanu Gupta, Shuguang Feng, Scott ...