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JPDC
2008
138views more  JPDC 2008»
13 years 7 months ago
Efficient parallel implementation of iterative reconstruction algorithms for electron tomography
Electron tomography (ET) combines electron microscopy and the principles of tomographic imaging in order to reconstruct the threedimensional structure of complex biological specim...
José-Jesús Fernández, Dan Gor...
WOB
2004
120views Bioinformatics» more  WOB 2004»
13 years 9 months ago
Reconfigurable Systems for Sequence Alignment and for General Dynamic Programming
ABSTRACT. Reconfigurable systolic arrays can be adapted to efficiently resolve a wide spectrum of computational problems; parallelism is naturally explored in systolic arrays and r...
Ricardo P. Jacobi, Mauricio Ayala-Rincón, L...
RECOMB
2010
Springer
13 years 5 months ago
Novel Definition and Algorithm for Chaining Fragments with Proportional Overlaps
Chaining fragments is a crucial step in genome alignment. Existing chaining algorithms compute a maximum weighted chain with no overlaps allowed between adjacent fragments. In prac...
Raluca Uricaru, Alban Mancheron, Eric Rivals
ADBIS
2000
Springer
111views Database» more  ADBIS 2000»
14 years 1 days ago
Discovering Frequent Episodes in Sequences of Complex Events
Data collected in many applications have a form of sequences of events. One of the popular data mining problems is discovery of frequently occurring episodes in such sequences. Eff...
Marek Wojciechowski
CSB
2003
IEEE
108views Bioinformatics» more  CSB 2003»
14 years 29 days ago
A Pattern Matching Algorithm for Codon Optimization and CpG Motif-Engineering in DNA Expression Vectors
Codon optimization enhances the efficiency of DNA expression vectors used in DNA vaccination and gene therapy by increasing protein expression. Additionally, certain nucleotide mo...
Ravi Vijaya Satya, Amar Mukherjee, Udaykumar Ranga