The representation of a genome by oligonucleotide probes is a prerequisite for the analysis of many of its basic properties, such as transcription factor binding sites, chromosomal...
—We investigate the k-LCS problem that is finding a longest common subsequence (LCS) for k given input strings. The problem is known to have practical solutions for k = 2, but f...
Marina Barsky, Ulrike Stege, Alex Thomo, Chris Upt...
Reachability and shortest path problems are NL-complete for general graphs. They are known to be in L for graphs of tree-width 2 [14]. However, for graphs of treewidth larger than ...
Trees and graphs are widely used to model biological databases. Providing efficient algorithms to support tree-based or graph-based querying is therefore an important issue. In th...
We develop an algorithm for estimating the values of a vector x Rn over a support S of size k from a randomized sparse binary linear sketch Ax of size O(k). Given Ax and S, we ca...