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» Efficient Algorithms for the Tree Homeomorphism Problem
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BMCBI
2005
122views more  BMCBI 2005»
13 years 8 months ago
Bayesian coestimation of phylogeny and sequence alignment
Background: Two central problems in computational biology are the determination of the alignment and phylogeny of a set of biological sequences. The traditional approach to this p...
Gerton Lunter, István Miklós, Alexei...
BIOCOMP
2006
13 years 10 months ago
PAC: Progressive Alignment with Consensus Sequences
Computation of multiple sequence alignments is one of the major open problems in computational molecular biology. The purpose of this study was to provide a new method, PAC (Progre...
Ke Liu, Mansur H. Samadzadeh
RECOMB
2005
Springer
14 years 8 months ago
Rapid Protein Side-Chain Packing via Tree Decomposition
This paper proposes a novel tree decomposition based side-chain assignment algorithm, which can obtain the globally optimal solution of the side-chain packing problem very efficien...
Jinbo Xu
WWW
2004
ACM
14 years 9 months ago
Automatic web news extraction using tree edit distance
The Web poses itself as the largest data repository ever available in the history of humankind. Major efforts have been made in order to provide efficient access to relevant infor...
Davi de Castro Reis, Paulo Braz Golgher, Altigran ...
SODA
2010
ACM
174views Algorithms» more  SODA 2010»
13 years 6 months ago
Differentially Private Combinatorial Optimization
Consider the following problem: given a metric space, some of whose points are "clients," select a set of at most k facility locations to minimize the average distance f...
Anupam Gupta, Katrina Ligett, Frank McSherry, Aaro...