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» Efficient Algorithms for the Tree Homeomorphism Problem
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KDD
2002
ACM
144views Data Mining» more  KDD 2002»
14 years 8 months ago
Efficiently mining frequent trees in a forest
Mining frequent trees is very useful in domains like bioinformatics, web mining, mining semi-structured data, and so on. We formulate the problem of mining (embedded) subtrees in ...
Mohammed Javeed Zaki
IFIP
2004
Springer
14 years 1 months ago
Efficient Algorithms for Handling Molecular Weighted Sequences
Abstract In this paper we introduce the Weighted Suffix Tree, an efficient data structure for computing string regularities in weighted sequences of molecular data. Molecular Wei...
Costas S. Iliopoulos, Christos Makris, Yannis Pana...
JCB
2006
115views more  JCB 2006»
13 years 8 months ago
Designing an A* Algorithm for Calculating Edit Distance between Rooted-Unordered Trees
Tree structures are useful for describing and analyzing biological objects and processes. Consequently, there is a need to design metrics and algorithms to compare trees. A natura...
Yair Horesh, Ramit Mehr, Ron Unger
CIAC
2010
Springer
232views Algorithms» more  CIAC 2010»
13 years 11 months ago
Multicut Algorithms via Tree Decompositions
Various forms of multicut problems are of great importance in the area of network design. In general, these problems are intractable. However, several parameters have been identifi...
Reinhard Pichler, Stefan Rümmele, Stefan Woltran
IWOCA
2010
Springer
219views Algorithms» more  IWOCA 2010»
13 years 3 months ago
Efficient Chaining of Seeds in Ordered Trees
We consider here the problem of chaining seeds in ordered trees. Seeds are mappings between two trees Q and T and a chain is a subset of non overlapping seeds that is consistent wi...
Julien Allali, Cedric Chauve, Pascal Ferraro, Anne...