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» Efficient Algorithms for the Tree Homeomorphism Problem
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TCBB
2008
107views more  TCBB 2008»
13 years 8 months ago
Progressive Tree Neighborhood Applied to the Maximum Parsimony Problem
Abstract-- The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from DNA sequences while minimizing the number of genetic transformations. To solve this NP-comp...
Adrien Goëffon, Jean-Michel Richer, Jin-Kao H...
CATA
2004
13 years 9 months ago
Optimal Trees for the Parametric Fixed Charge Shortest Paths Problem
We investigate a variant of the Fixed Charge Shortest Paths problem which enumerates the sequence of optimal solutions that arise as the focus shifts from the fixed cost parameter...
Fred J. Rispoli, Steven Cosares
STOC
2003
ACM
133views Algorithms» more  STOC 2003»
14 years 8 months ago
A fast algorithm for computing steiner edge connectivity
Given an undirected graph or an Eulerian directed graph G and a subset S of its vertices, we show how to determine the edge connectivity C of the vertices in S in time O(C3 n log ...
Richard Cole, Ramesh Hariharan
CONPAR
1992
14 years 15 days ago
Analysis of an Efficient Distributed Algorithm for Mutual Exclusion (Average-Case Analysis of Path Reversal)
The algorithm designed in [12, 15] was the very first distributed algorithm to solve the mutual exclusion problem in complete networks by using a dynamic logical tree structure as...
Christian Lavault
BMCBI
2010
135views more  BMCBI 2010»
13 years 8 months ago
Efficient genome-scale phylogenetic analysis under the duplication-loss and deep coalescence cost models
Background: Genomic data provide a wealth of new information for phylogenetic analysis. Yet making use of this data requires phylogenetic methods that can efficiently analyze extr...
Mukul S. Bansal, J. Gordon Burleigh, Oliver Eulens...