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» Efficient Enumeration of Frequent Sequences
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BMCBI
2011
12 years 11 months ago
Protein alignment algorithms with an efficient backtracking routine on multiple GPUs
Background: Pairwise sequence alignment methods are widely used in biological research. The increasing number of sequences is perceived as one of the upcoming challenges for seque...
Jacek Blazewicz, Wojciech Frohmberg, Michal Kierzy...
BMCBI
2010
189views more  BMCBI 2010»
13 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
JIPS
2010
154views more  JIPS 2010»
13 years 2 months ago
Mining Spatio-Temporal Patterns in Trajectory Data
Spatio-temporal patterns extracted from historical trajectories of moving objects reveal important knowledge about movement behavior for high quality LBS services. Existing approac...
Juyoung Kang 0002, Hwan-Seung Yong
CIKM
2009
Springer
13 years 11 months ago
Efficient itemset generator discovery over a stream sliding window
Mining generator patterns has raised great research interest in recent years. The main purpose of mining itemset generators is that they can form equivalence classes together with...
Chuancong Gao, Jianyong Wang
BMCBI
2006
141views more  BMCBI 2006»
13 years 7 months ago
Identification of consensus RNA secondary structures using suffix arrays
Background: The identification of a consensus RNA motif often consists in finding a conserved secondary structure with minimum free energy in an ensemble of aligned sequences. How...
Mohammad Anwar, Truong Nguyen, Marcel Turcotte