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BMCBI
2008
211views more  BMCBI 2008»
13 years 7 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
VLDB
2002
ACM
83views Database» more  VLDB 2002»
13 years 7 months ago
Searching on the Secondary Structure of Protein Sequences
In spite of the many decades of progress in database research, surprisingly scientists in the life sciences community still struggle with inefficient and awkward tools for queryin...
Laurie Hammel, Jignesh M. Patel
CVPR
2000
IEEE
14 years 9 months ago
A Curve Evolution Approach to Smoothing and Segmentation Using the Mumford-Shah Functional
In this work, we approach the classic Mumford-Shah problem from a curve evolution perspective. In particular, we let a given family of curves define the boundaries between regions...
Andy Tsai, Anthony J. Yezzi, Alan S. Willsky
BMCBI
2010
182views more  BMCBI 2010»
13 years 7 months ago
L2-norm multiple kernel learning and its application to biomedical data fusion
Background: This paper introduces the notion of optimizing different norms in the dual problem of support vector machines with multiple kernels. The selection of norms yields diff...
Shi Yu, Tillmann Falck, Anneleen Daemen, Lé...
SIAMSC
2008
131views more  SIAMSC 2008»
13 years 7 months ago
Gramian-Based Model Reduction for Data-Sparse Systems
Model order reduction (MOR) is common in simulation, control and optimization of complex dynamical systems arising in modeling of physical processes and in the spatial discretizati...
Ulrike Baur, Peter Benner