Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Abstract--Dictionary-based string matching (DBSM) is a critical component of Deep Packet Inspection (DPI), where thousands of malicious patterns are matched against high-bandwidth ...
Yi-Hua E. Yang, Viktor K. Prasanna, Chenqian Jiang
We present a novel approach to ray tracing execution on commodity graphics hardware using CUDA. We decompose
a standard ray tracing algorithm into several data-parallel stages tha...
A new computational framework is developed for the evolutionary determination of molecular crystal structures using the Shake-and-Bake methodology. Genetic algorithms are performe...
Given the sequential implementation of any data structure, we show how to obtain an efficient, wait-free implementation of that data structure shared by any fixed number of proces...