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IPPS
2006
IEEE
14 years 1 months ago
FPGA based architecture for DNA sequence comparison and database search
DNA sequence comparison is a computationally intensive problem, known widely since the competition for human DNA decryption. Database search for DNA sequence comparison is of grea...
Euripides Sotiriades, Christos Kozanitis, Apostolo...
IPPS
2005
IEEE
14 years 1 months ago
Comparison of Current BLAST Software on Nucleotide Sequences
The computational power needed for searching exponentially growing databases, such as GenBank, has increased dramatically. Three different implementations of the most widely used ...
I. Elizabeth Cha, Eric C. Rouchka
IPPS
2006
IEEE
14 years 1 months ago
A simulator for parallel applications with dynamically varying compute node allocation
Dynamically allocating computing nodes to parallel applications is a promising technique for improving the utilization of cluster resources. We introduce the concept of dynamic ef...
Basile Schaeli, B. Gerlach, Roger D. Hersch
BMCBI
2008
77views more  BMCBI 2008»
13 years 7 months ago
SeqAn An efficient, generic C++ library for sequence analysis
Background: The use of novel algorithmic techniques is pivotal to many important problems in life science. For example the sequencing of the human genome [1] would not have been p...
Andreas Döring, David Weese, Tobias Rausch, K...
DEBS
2007
ACM
13 years 11 months ago
Scalable event matching for overlapping subscriptions in pub/sub systems
Content-based publish/subscribe systems allow matching the content of events with predicates in the subscriptions. However, most existing systems only allow a limited set of opera...
Zhen Liu, Srinivasan Parthasarathy 0002, Anand Ran...