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» Efficient Seeding Techniques for Protein Similarity Search
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BMCBI
2008
200views more  BMCBI 2008»
13 years 9 months ago
Defining functional distances over Gene Ontology
Background: A fundamental problem when trying to define the functional relationships between proteins is the difficulty in quantifying functional similarities, even when well-stru...
Angela del Pozo, Florencio Pazos, Alfonso Valencia
WWW
2006
ACM
14 years 9 months ago
Efficient search for peer-to-peer information retrieval using semantic small world
This paper proposes a semantic overlay based on the small world phenomenon that facilitates efficient search for information retrieval in unstructured P2P systems. In the semantic...
Hai Jin, Xiaomin Ning, Hanhua Chen
BIBE
2009
IEEE
126views Bioinformatics» more  BIBE 2009»
14 years 3 months ago
Mining Positional Association Super-Rules on Fixed-Size Protein Sequence Motifs
— Protein sequence motifs information is crucial to the analysis of biologically significant regions. The conserved regions have the potential to determine the role of the protei...
Bernard Chen, Sinan Kockara
BMCBI
2008
211views more  BMCBI 2008»
13 years 9 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
BMCBI
2010
160views more  BMCBI 2010»
13 years 9 months ago
Identification of functional hubs and modules by converting interactome networks into hierarchical ordering of proteins
Background: Protein-protein interactions play a key role in biological processes of proteins within a cell. Recent high-throughput techniques have generated protein-protein intera...
Young-Rae Cho, Aidong Zhang