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» Efficient Seeding Techniques for Protein Similarity Search
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CSB
2004
IEEE
142views Bioinformatics» more  CSB 2004»
14 years 24 days ago
FastR: Fast Database Search Tool for Non-Coding RNA
The discovery of novel non-coding RNAs has been among the most exciting recent developments in Biology. Yet, many more remain undiscovered. It has been hypothesized that there is ...
Vineet Bafna, Shaojie Zhang
BMCBI
2010
111views more  BMCBI 2010»
13 years 9 months ago
Protein sequences classification by means of feature extraction with substitution matrices
Background: This paper deals with the preprocessing of protein sequences for supervised classification. Motif extraction is one way to address that task. It has been largely used ...
Rabie Saidi, Mondher Maddouri, Engelbert Mephu Ngu...
RECOMB
2005
Springer
14 years 9 months ago
Recognition of Binding Patterns Common to a Set of Protein Structures
We present a novel computational method, MultiBind, for recognition of binding patterns common to a set of protein structures. It is the first method which performs a multiple alig...
Maxim Shatsky, Alexandra Shulman-Peleg, Ruth Nussi...
FLAIRS
2000
13 years 10 months ago
Simultaneous Search in Connection Tableau Calculi by Means of Disjunctive Constraints
Automatedtheorem proving with connection tableau calculi imposessearch problemsin tremendoussearch spaces. In this paper, wepresent a newapproachto search space reduction in conne...
Ortrun Ibens
SIGSOFT
2005
ACM
14 years 2 months ago
Detecting higher-level similarity patterns in programs
Cloning in software systems is known to create problems during software maintenance. Several techniques have been proposed to detect the same or similar code fragments in software...
Hamid Abdul Basit, Stan Jarzabek