Sciweavers

229 search results - page 8 / 46
» Efficient Seeding Techniques for Protein Similarity Search
Sort
View
BIBE
2003
IEEE
183views Bioinformatics» more  BIBE 2003»
14 years 1 months ago
Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
Ozgur Ozturk, Hakan Ferhatosmanoglu
VLDB
2007
ACM
197views Database» more  VLDB 2007»
14 years 8 months ago
Indexable PLA for Efficient Similarity Search
Similarity-based search over time-series databases has been a hot research topic for a long history, which is widely used in many applications, including multimedia retrieval, dat...
Qiuxia Chen, Lei Chen 0002, Xiang Lian, Yunhao Liu...
BMCBI
2008
168views more  BMCBI 2008»
13 years 8 months ago
Predicting protein folding pathways at the mesoscopic level based on native interactions between secondary structure elements
Background: Since experimental determination of protein folding pathways remains difficult, computational techniques are often used to simulate protein folding. Most current techn...
Qingwu Yang, Sing-Hoi Sze
BMCBI
2006
147views more  BMCBI 2006»
13 years 7 months ago
QPath: a method for querying pathways in a protein-protein interaction network
Background: Sequence comparison is one of the most prominent tools in biological research, and is instrumental in studying gene function and evolution. The rapid development of hi...
Tomer Shlomi, Daniel Segal, Eytan Ruppin, Roded Sh...
SSDBM
2010
IEEE
220views Database» more  SSDBM 2010»
14 years 4 days ago
Prefix Tree Indexing for Similarity Search and Similarity Joins on Genomic Data
Similarity search and similarity join on strings are important for applications such as duplicate detection, error detection, data cleansing, or comparison of biological sequences....
Astrid Rheinländer, Martin Knobloch, Nicky Ho...