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BMCBI
2008
211views more  BMCBI 2008»
13 years 8 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
GCB
2004
Springer
223views Biometrics» more  GCB 2004»
14 years 10 days ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
MM
2006
ACM
167views Multimedia» more  MM 2006»
14 years 2 months ago
Image annotation by large-scale content-based image retrieval
Image annotation has been an active research topic in recent years due to its potentially large impact on both image understanding and Web image search. In this paper, we target a...
Xirong Li, Le Chen, Lei Zhang, Fuzong Lin, Wei-Yin...
BMCBI
2006
120views more  BMCBI 2006»
13 years 8 months ago
Projections for fast protein structure retrieval
Background: In recent times, there has been an exponential rise in the number of protein structures in databases e.g. PDB. So, design of fast algorithms capable of querying such d...
Sourangshu Bhattacharya, Chiranjib Bhattacharyya, ...
KDD
2004
ACM
216views Data Mining» more  KDD 2004»
14 years 9 months ago
GPCA: an efficient dimension reduction scheme for image compression and retrieval
Recent years have witnessed a dramatic increase in the quantity of image data collected, due to advances in fields such as medical imaging, reconnaissance, surveillance, astronomy...
Jieping Ye, Ravi Janardan, Qi Li