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» Efficient Staggered Decoding for Sequence Labeling
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ACL
2010
13 years 5 months ago
Efficient Staggered Decoding for Sequence Labeling
The Viterbi algorithm is the conventional decoding algorithm most widely adopted for sequence labeling. Viterbi decoding is, however, prohibitively slow when the label set is larg...
Nobuhiro Kaji, Yasuhiro Fujiwara, Naoki Yoshinaga,...
BMCBI
2010
123views more  BMCBI 2010»
13 years 7 months ago
Decoding HMMs using the k best paths: algorithms and applications
Background: Traditional algorithms for hidden Markov model decoding seek to maximize either the probability of a state path or the number of positions of a sequence assigned to th...
Daniel G. Brown 0001, Daniil Golod
ICML
2006
IEEE
14 years 8 months ago
Online decoding of Markov models under latency constraints
The Viterbi algorithm is an efficient and optimal method for decoding linear-chain Markov Models. However, the entire input sequence must be observed before the labels for any tim...
Mukund Narasimhan, Paul A. Viola, Michael Shilman
BMCBI
2005
114views more  BMCBI 2005»
13 years 7 months ago
A new decoding algorithm for hidden Markov models improves the prediction of the topology of all-beta membrane proteins
Background: Structure prediction of membrane proteins is still a challenging computational problem. Hidden Markov models (HMM) have been successfully applied to the problem of pre...
Piero Fariselli, Pier Luigi Martelli, Rita Casadio