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BMCBI
2008
211views more  BMCBI 2008»
13 years 10 months ago
CUDA compatible GPU cards as efficient hardware accelerators for Smith-Waterman sequence alignment
Background: Searching for similarities in protein and DNA databases has become a routine procedure in Molecular Biology. The Smith-Waterman algorithm has been available for more t...
Svetlin Manavski, Giorgio Valle
PAA
2006
13 years 10 months ago
Efficient median based clustering and classification techniques for protein sequences
Abstract In this paper, an efficient K-medians clustering (unsupervised) algorithm for prototype selection and Supervised K-medians (SKM) classification technique for protein seque...
P. A. Vijaya, M. Narasimha Murty, D. K. Subramania...
SIGSOFT
2007
ACM
14 years 10 months ago
Efficient checkpointing of java software using context-sensitive capture and replay
Checkpointing and replaying is an attractive technique that has been used widely at the operating/runtime system level to provide fault tolerance. Applying such a technique at the...
Guoqing Xu, Atanas Rountev, Yan Tang, Feng Qin
ASPLOS
2009
ACM
14 years 10 months ago
Kendo: efficient deterministic multithreading in software
Although chip-multiprocessors have become the industry standard, developing parallel applications that target them remains a daunting task. Non-determinism, inherent in threaded a...
Marek Olszewski, Jason Ansel, Saman P. Amarasinghe
DAGSTUHL
2006
13 years 11 months ago
Efficient Software Model Checking of Data Structure Properties
This paper presents novel language and analysis techniques that significantly speed up software model checking of data structure properties. Consider checking a red-black tree imp...
Chandrasekhar Boyapati, Paul T. Darga