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» Efficient Trie-Based Sorting of Large Sets of Strings
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JMLR
2010
134views more  JMLR 2010»
13 years 2 months ago
Using Contextual Representations to Efficiently Learn Context-Free Languages
We present a polynomial update time algorithm for the inductive inference of a large class of context-free languages using the paradigm of positive data and a membership oracle. W...
Alexander Clark, Rémi Eyraud, Amaury Habrar...
BMCBI
2010
189views more  BMCBI 2010»
13 years 7 months ago
Efficient parallel and out of core algorithms for constructing large bi-directed de Bruijn graphs
Background: Assembling genomic sequences from a set of overlapping reads is one of the most fundamental problems in computational biology. Algorithms addressing the assembly probl...
Vamsi Kundeti, Sanguthevar Rajasekaran, Hieu Dinh,...
BALT
2006
13 years 11 months ago
Introducing Softness into Inductive Queries on String Databases
In many application domains (e.g., WWW mining, molecular biology), large string datasets are available and yet under-exploited. The inductive database framework assumes that both s...
Ieva Mitasiunaite, Jean-François Boulicaut
FOCS
2004
IEEE
13 years 11 months ago
On the Streaming Model Augmented with a Sorting Primitive
The need to deal with massive data sets in many practical applications has led to a growing interest in computational models appropriate for large inputs. The most important quali...
Gagan Aggarwal, Mayur Datar, Sridhar Rajagopalan, ...
JMIV
2006
130views more  JMIV 2006»
13 years 7 months ago
Alternative 2D Shape Representations using the Symmetry Set
Among the many attempts made to represent families of 2D shapes in a simpler way, the Medial Axis (MA) takes a prominent place. Its graphical representation is intuitively appealin...
Arjan Kuijper, Ole Fogh Olsen, Peter J. Giblin, Ma...