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» Efficient Variants of the Backward-Oracle-Matching Algorithm
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BMCBI
2010
227views more  BMCBI 2010»
13 years 8 months ago
Accurate and efficient gp120 V3 loop structure based models for the determination of HIV-1 co-receptor usage
Background: HIV-1 targets human cells expressing both the CD4 receptor, which binds the viral envelope glycoprotein gp120, as well as either the CCR5 (R5) or CXCR4 (X4) co-recepto...
Majid Masso, Iosif I. Vaisman
APPROX
2006
Springer
124views Algorithms» more  APPROX 2006»
14 years 11 days ago
Combinatorial Algorithms for Data Migration to Minimize Average Completion Time
The data migration problem is to compute an efficient plan for moving data stored on devices in a network from one configuration to another. It is modeled by a transfer graph, wher...
Rajiv Gandhi, Julián Mestre
BMCBI
2006
129views more  BMCBI 2006»
13 years 8 months ago
Fast index based algorithms and software for matching position specific scoring matrices
Background: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs in nucleotide as well as amino acid sequences....
Michael Beckstette, Robert Homann, Robert Giegeric...
PVLDB
2008
232views more  PVLDB 2008»
13 years 7 months ago
FINCH: evaluating reverse k-Nearest-Neighbor queries on location data
A Reverse k-Nearest-Neighbor (RkNN) query finds the objects that take the query object as one of their k nearest neighbors. In this paper we propose new solutions for evaluating R...
Wei Wu, Fei Yang, Chee Yong Chan, Kian-Lee Tan
IJSIR
2010
161views more  IJSIR 2010»
13 years 5 months ago
Bacterial Foraging Optimization
Bacterial foraging optimization algorithm (BFOA) has been widely accepted as a global optimization algorithm of current interest for distributed optimization and control. BFOA is i...
Kevin M. Passino