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BMCBI
2010
136views more  BMCBI 2010»
13 years 7 months ago
SCPS: a fast implementation of a spectral method for detecting protein families on a genome-wide scale
Background: An important problem in genomics is the automatic inference of groups of homologous proteins from pairwise sequence similarities. Several approaches have been proposed...
Tamás Nepusz, Rajkumar Sasidharan, Alberto ...
GCB
2004
Springer
223views Biometrics» more  GCB 2004»
13 years 11 months ago
PoSSuMsearch: Fast and Sensitive Matching of Position Specific Scoring Matrices using Enhanced Suffix Arrays
: In biological sequence analysis, position specific scoring matrices (PSSMs) are widely used to represent sequence motifs. In this paper, we present a new nonheuristic algorithm, ...
Michael Beckstette, Dirk Strothmann, Robert Homann...
ICIP
2007
IEEE
14 years 9 months ago
Blind Audiovisual Source Separation using Sparse Representations
In this work we present a method to jointly separate active audio and visual structures on a given mixture. Blind Audiovisual Source Separation is achieved exploiting the coherenc...
Anna Llagostera Casanovas, Gianluca Monaci, Pierre...
ANOR
2008
66views more  ANOR 2008»
13 years 7 months ago
Optimization problems involving collections of dependent objects
We describe a class of problems motivated by numerous real-world applications where there is a collection of objects that have both a cost and a value, but where some of those obj...
David L. Roberts, Charles L. Isbell, Michael L. Li...
BMCBI
2008
125views more  BMCBI 2008»
13 years 7 months ago
Tandem duplication, circular permutation, molecular adaptation: how Solanaceae resist pests via inhibitors
Background: The Potato type II (Pot II) family of proteinase inhibitors plays critical roles in the defense system of plants from Solanaceae family against pests. To better unders...
Lesheng Kong, Shoba Ranganathan