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BCB
2010
166views Bioinformatics» more  BCB 2010»
13 years 2 months ago
Fast graph approaches to measure influenza transmission across geographically distributed host types
Recent advances in next generation sequencing are providing a number of large whole-genome sequence datasets stemming from globally distributed disease occurrences. This offers an...
Adrienne Breland, Karen Schlauch, Mehmet Hadi Gune...
KDD
2005
ACM
92views Data Mining» more  KDD 2005»
14 years 7 months ago
Summarizing itemset patterns: a profile-based approach
Frequent-pattern mining has been studied extensively on scalable methods for mining various kinds of patterns including itemsets, sequences, and graphs. However, the bottleneck of...
Xifeng Yan, Hong Cheng, Jiawei Han, Dong Xin
BMCBI
2006
113views more  BMCBI 2006»
13 years 7 months ago
GibbsST: a Gibbs sampling method for motif discovery with enhanced resistance to local optima
Background: Computational discovery of transcription factor binding sites (TFBS) is a challenging but important problem of bioinformatics. In this study, improvement of a Gibbs sa...
Kazuhito Shida
RECOMB
2010
Springer
14 years 2 months ago
A Novel Abundance-Based Algorithm for Binning Metagenomic Sequences Using l-Tuples
Abstract. Metagenomics is the study of microbial communities sampled directly from their natural environment, without prior culturing. Among the computational tools recently develo...
Yu-Wei Wu, Yuzhen Ye
ECML
2007
Springer
13 years 11 months ago
Efficient Computation of Recursive Principal Component Analysis for Structured Input
Recently, a successful extension of Principal Component Analysis for structured input, such as sequences, trees, and graphs, has been proposed. This allows the embedding of discret...
Alessandro Sperduti