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SIAMCOMP
2008
121views more  SIAMCOMP 2008»
13 years 7 months ago
Closest Substring Problems with Small Distances
We study two pattern matching problems that are motivated by applications in computational biology. In the Closest Substring problem k strings s1, . . ., sk are given, and the tas...
Dániel Marx
FPGA
2004
ACM
163views FPGA» more  FPGA 2004»
13 years 11 months ago
Time and area efficient pattern matching on FPGAs
Pattern matching for network security and intrusion detection demands exceptionally high performance. Much work has been done in this field, and yet there is still significant roo...
Zachary K. Baker, Viktor K. Prasanna
CPM
1998
Springer
209views Combinatorics» more  CPM 1998»
13 years 11 months ago
A Fast Bit-Vector Algorithm for Approximate String Matching Based on Dynamic Programming
The approximate string matching problem is to find all locations at which a query of length m matches a substring of a text of length n with k-or-fewer differences. Simple and prac...
Gene Myers
COLING
2010
13 years 2 months ago
Simple and Efficient Algorithm for Approximate Dictionary Matching
This paper presents a simple and efficient algorithm for approximate dictionary matching designed for similarity measures such as cosine, Dice, Jaccard, and overlap coefficients. ...
Naoaki Okazaki, Jun-ichi Tsujii
FOCS
2009
IEEE
13 years 11 months ago
Space-Efficient Framework for Top-k String Retrieval Problems
Given a set D = {d1, d2, ..., dD} of D strings of total length n, our task is to report the "most relevant" strings for a given query pattern P. This involves somewhat mo...
Wing-Kai Hon, Rahul Shah, Jeffrey Scott Vitter