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» Encodings of the Sequence Constraint
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CP
2003
Springer
14 years 19 days ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
ISMB
1998
13 years 8 months ago
A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences
A novel method to model and predict the location and orientation of alpha helices in membrane- spanning proteins is presented. It is based on a hidden Markov model (HMM) with an a...
Erik L. L. Sonnhammer, Gunnar von Heijne, Anders K...
ISMVL
2009
IEEE
96views Hardware» more  ISMVL 2009»
14 years 2 months ago
Evaluation of Cardinality Constraints on SMT-Based Debugging
For formal verification of hardware Satisfiability Modulo Theory (SMT) solvers are increasingly applied. Today’s state-of-the-art SMT solvers use different techniques like ter...
André Sülflow, Robert Wille, Görs...
TIT
2002
98views more  TIT 2002»
13 years 7 months ago
DC-free binary convolutional coding
A novel DC-free binary convolutional coding scheme is presented. The proposed scheme achieves the DC-free and error correcting capability simultaneously. The scheme has a simple ca...
Tadashi Wadayama, A. J. Han Vinck
TIT
2010
124views Education» more  TIT 2010»
13 years 2 months ago
On the capacity of the precision-resolution system
Arguably, the most prominent constrained system in storage applications is the (d; k)-run-length limited (RLL) system, where every binary sequence obeys the constraint that every t...
Moshe Schwartz, Jehoshua Bruck