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» Encodings of the Sequence Constraint
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CP
2003
Springer
15 years 9 months ago
A SAT-Based Approach to Multiple Sequence Alignment
Multiple sequence alignment is a central problem in Bioinformatics. A known integer programming approach is to apply branch-and-cut to exponentially large graph-theoretic models. T...
Steven David Prestwich, Desmond G. Higgins, Orla O...
ISMB
1998
15 years 5 months ago
A Hidden Markov Model for Predicting Transmembrane Helices in Protein Sequences
A novel method to model and predict the location and orientation of alpha helices in membrane- spanning proteins is presented. It is based on a hidden Markov model (HMM) with an a...
Erik L. L. Sonnhammer, Gunnar von Heijne, Anders K...
ISMVL
2009
IEEE
96views Hardware» more  ISMVL 2009»
15 years 11 months ago
Evaluation of Cardinality Constraints on SMT-Based Debugging
For formal verification of hardware Satisfiability Modulo Theory (SMT) solvers are increasingly applied. Today’s state-of-the-art SMT solvers use different techniques like ter...
André Sülflow, Robert Wille, Görs...
TIT
2002
98views more  TIT 2002»
15 years 3 months ago
DC-free binary convolutional coding
A novel DC-free binary convolutional coding scheme is presented. The proposed scheme achieves the DC-free and error correcting capability simultaneously. The scheme has a simple ca...
Tadashi Wadayama, A. J. Han Vinck
TIT
2010
124views Education» more  TIT 2010»
14 years 11 months ago
On the capacity of the precision-resolution system
Arguably, the most prominent constrained system in storage applications is the (d; k)-run-length limited (RLL) system, where every binary sequence obeys the constraint that every t...
Moshe Schwartz, Jehoshua Bruck