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ICALP
2007
Springer
13 years 11 months ago
In-Place Suffix Sorting
Given string T = T[1, . . . , n], the suffix sorting problem is to lexicographically sort the suffixes T[i, . . . , n] for all i. This problem is central to the construction of suf...
Gianni Franceschini, S. Muthukrishnan
CIKM
2005
Springer
14 years 28 days ago
Exact match search in sequence data using suffix trees
We study suitable indexing techniques to support efficient exact match search in large biological sequence databases. We propose a suffix tree (ST) representation, called STA-DF, ...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
BIRD
2007
Springer
128views Bioinformatics» more  BIRD 2007»
14 years 1 months ago
Efficient and Scalable Indexing Techniques for Biological Sequence Data
We investigate indexing techniques for sequence data, crucial in a wide variety of applications, where efficient, scalable, and versatile search algorithms are required. Recent res...
Mihail Halachev, Nematollaah Shiri, Anand Thamildu...
TASLP
2010
106views more  TASLP 2010»
13 years 2 months ago
Efficient and Robust Music Identification With Weighted Finite-State Transducers
We present an approach to music identification based on weighted finite-state transducers and Gaussian mixture models, inspired by techniques used in large-vocabulary speech recogn...
Mehryar Mohri, Pedro Moreno, Eugene Weinstein
ICDE
2004
IEEE
105views Database» more  ICDE 2004»
14 years 8 months ago
SPINE: Putting Backbone into String Indexing
The indexing technique commonly used for long strings, such as genomes, is the suffix tree, which is based on a vertical (intra-path) compaction of the underlying trie structure. ...
Naresh Neelapala, Romil Mittal, Jayant R. Haritsa